PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G178000.4
Common NameB456_006G178000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 280aa    MW: 30382.3 Da    PI: 9.6082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G178000.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-143983147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
  Gorai.006G178000.4 39 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 83
                        789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-173389IPR009057Homeodomain-like
PROSITE profilePS5129416.2913488IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-73789IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-193786IPR006447Myb domain, plants
SMARTSM007171.1E-113886IPR001005SANT/Myb domain
PfamPF002496.4E-123983IPR001005SANT/Myb domain
CDDcd001671.90E-94184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0032922Biological Processcircadian regulation of gene expression
GO:0043966Biological Processhistone H3 acetylation
GO:0046686Biological Processresponse to cadmium ion
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MNSSPNPPQP PPPQSSTSTT ATDGSGKKVR KPYTITKSRE SWTEEEHDKF LEALQLFDRD  60
WKKIEDFVGS KTVIQIRSHA QKYFLKVQKN GTIAHVPPPR PKRKAAHPYP QKASKNVLVP  120
LQASMGYPSS INTIAPGYAP WDEASMLVNT ASSKIMSPQD EFTGLRGTEA NIGSKGVAKI  180
SNSGVSGIGS SGQTISNSDM SKQGKQASML HGIPDFAEVY SFIGSVFDPD TDGHVQKLKE  240
MDPINFETRK VLSSYDVGTN TVGVTKGIIP QNQMNDILC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00338DAPTransfer from AT3G09600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486161.11e-179PREDICTED: protein REVEILLE 8-like isoform X2
SwissprotQ8RWU31e-129RVE8_ARATH; Protein REVEILLE 8
TrEMBLA0A0D2NUB00.0A0A0D2NUB0_G
STRINGPOPTR_0006s13530.11e-140(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-100MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]